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= BDF - Beijing Density Functional program package = | = BDF-G: Gaussian function based BDF (Beijing Density Functional) program package = '''Chinese version:''' https://bdf-manual.readthedocs.io/en/latest/ (note that this is the manual of the commercialized version of BDF, which only includes a subset of all the functionalities of BDF) |
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The Gaussian-based BDF program started from 2009. == List of futures == |
The Gaussian function based BDF program started in 2009 based on several contributions from previous group members. ''Compared with other quantum chemistry programs, it mainly focuses on '''relativistic effects''' and '''excited-state properties''' of '''large molecules'''. '' Currently, it is not open to everyone, since we are still trying to make it easier to use. However, if you are interested in using it '''for the above problems''', please contact the authors for collaboration: * Wenjian Liu: https://www.researchgate.net/profile/Wenjian_Liu * Bingbing Suo: https://www.researchgate.net/profile/Bingbing_Suo * Zhendong Li: https://www.researchgate.net/profile/Zhendong_Li4 * ..... == List of features == |
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* TD-DFT and SOC ==== Local MP2 ==== ==== CC with SOC ==== |
* Relativistic Hamiltonians: sf-X2C/SOMF * R,RO,U SCF ([[scf]]): Hatree-Fock and DFT. The fragmentation-based FLMO method can speedup the calculation of very large molecules while still obtaining the exact results; the converged localized MOs (LMOs) can be obtained as a byproduct for free. * Variants of TD-DFT ([[tddft]]), with special emphasis on open-shell TD-DFT, SOC effects at the TD-DFT level, and internal roots (e.g. core excitations) at the TD-DFT level * MP2 ([[mp2]]) for MP2, SCS-MP2 and double hybrid functional calculations, and Local MP2 based on fragmentations * BDFOPT ([[bdfopt]]): Geometry optimization, numerical Hessian and thermochemistry analysis * MCSCF ([[mcscf]]): Multi-configuration self-consistent-field * Localmo ([[localmo]]): Orbital localization by localization functionals. * Expandmo ([[expandmo]]): imposed CAS (iCAS) and AVAS for automatic active space selection and expand molecular orbital from a small basis set into a large basis set. * Gradient ([[grad]] and [[resp]]): SCF, DFT, TDDFT, (SA-)CASSCF analytic gradients * Response properties ([[resp]]): DFT and TDDFT non-adiabatic coupling matrix elements, polarizabilities, hyperpolarizabilities etc. * Numerical Gradient ([[numgrad]]): Numerical gradient for SCF, DFT, TDDFT, CCSD(T), MCSCF and Multi Reference methods in xianci module * MOs integrals transformation ([[traint]]): MOs integrals transformation for TDDFT, MRCI, MRPT2 and other Post-HF methods. * VGMF-CI ([[vgmfci]]): Vibrational General Mean Field Configuration interaction * NMR ([[nmr]]): Nuclear Magnetic Resonance * MRCISD: from uncontracted to fully internally contracted MRCI, * MRPT2: Various MRPT2 methods include MS-NEVPT2/3, SDSPT2, SDSCI, CB-MRPT2/3 * CCSD,CCSD(T),EOM-CCSD ([[ccsdso]]): Coupled Cluster Theory developed in Sichuan University (Prof. Fan Wang). * REM: Renormalize Exciton Method developed by Nanjing University. (Prof. Jing Ma. Prof. Haibo Ma) * NTO analysis ([[tddft]]): Natural transition orbital analysis based on TDDFT/TDHF * Two diabatic states coupling to calculate energy transfer and charge transfer integrals. * Automatic fragmentation driver ([[autofrag]]) for fragmentation-based methods (FLMO, iOI) === Package developed by other groups that are interfaced or integrated into BDF === * CC with SOC [[ccsdso]] (Fan Wang) * UND-MCSCF -- Developed by Mark Hoffman in North Dakota University * MCCEPA * DETCI * Xi'an-CI Program [[xianci]] -- Developed by Zhenyi Wen, Yubin Wang, Zhengting Gan, Bingbing Suo and Yibo Lei in Northwest University * GEBF -- Developed by Nanjing University * dlfind * libcint * xcfun * libxc * UniMoVib (Wenli Zou) |
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---- /!\ '''Edit conflict - your version:''' ---- 3. CC with SOC === Under development === ---- /!\ '''End of edit conflict''' ---- 1. Response properties based on DFT 2. NMR 3. Localizations ---- /!\ '''Edit conflict - other version:''' ---- |
|
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1. Geometry optimisation 4. Interface to dynamics 2. 2C and 4C DHF/KS 3. QM/MM ---- /!\ '''Edit conflict - your version:''' ---- === Future development === 1. Geometry optimisation 4. Interface to dynamics 2. 2C and 4C DHF/KS 3. QM/MM ---- /!\ '''End of edit conflict''' ---- |
* [[Large-scale DFT/TD-DFT and heterogeneous computing]] (Bingbing Suo) * [[2C and 4C DHF/KS]] (Daoling Peng) * [[NMR and NSR]] (Yunlong Xiao) * [[QM/MM]] (Jun Gao) * Interface to dynamics (Jun Gao) == Recent major changes == '''2019.11.28: By Bingbing Suo: BDF easy input''' An important progress for users. BDF now supports a simplified input style. see [[bdfeasyinput]] == Known problems == [[KnownProblems]] == Quick start == To get a quick start, please refer to the examples in '''bdf-pkg/tests/input/'''. * [[Define your own basis set]] * [[Change the amount of HF exchange in functionals]] * [[Nonabelian symmetry]] * Characters in BDF input are case insensitive. However, the name of basis set file should be capital letters such as "CC-PVDZ". The environment variables such as BDFHOME, BDF_TMPDIR, BDF_WORKDIR should be capital letters. |
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The following programs are listed in '''bdf-pkg/database/program.dat'''. If there is any problem and question, please contact the corresponding authors. | The following programs are listed in '''bdf-pkg/database/program.dat'''. If there is any problem or question, please contact the corresponding authors. |
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||[[compass]] ||几何结构 ||Bingbing Suo || | ||[[compass]] ||几何结构与基组 ||Bingbing Suo || || || |
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||rhfscf ||??? || || | || || ||[[scf]] ||SCF (KS and HF) ||Bingbing Suo, Zhendong Li || || || |
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||drt ||DRT || || ||mrci ||MRCI || || ||cbmrpt2 ||CBMRPT2 || || ||dcci ||DCCI || || ||mrso ||??? || || ||trnx ||??? || || ||mcscf ||MCSCF || || ||[[scf]] ||SCF (KS and HF) ||Bingbing Suo, Zhendong Li || ||guess ||??? || || |
|| || ||[[tddft]] ||TD-DFT ||Zhendong Li, Bingbing Suo || || || ||[[resp]] ||DFT-response theory ||Zhendong Li || || || ||mp2 ||MP2 ||Bingbing Suo || || || ||[[localmo]] ||localization || || || || ||[[bdfopt]] ||Geometry optimization ||Bingbing Suo, Zhendong Li || || || ||[[nmr]] ||NMR ||Minghong Yuan || || || ||[[mcscf]] ||MCSCF || Bingbing Suo, Yibo Lei|| || || ||[[grad]] || Analytic Gradients - RHF and MCSCF ||Bingbing Suo, Yibo Lei || ||[[numgrad]] || Numerical Gradients - RHF, MCSCF, Xi'an-CI methods ||Yibo Lei || || || ||[[expandmo]] ||AVAS method and expand MO coefficients from a small basis set to a large basis set ||Bingbing Suo, Yibo Lei || || || ||[[atom]] ||Atom calculations ||Zhendong Li || || || ||drt ||DRT ||Yibo Lei, Yubin Wang, Bingbing Suo, Zhenyi Wen || ||mrci ||MRCI ||Yibo Lei, Yubin Wang, Bingbing Suo, Zhenyi Wen || || [[xianci]] || MRCI from uncontracted to fully internally contracted MRCI, Various MRPT2 methods || Yibo Lei, Yubin Wang, Bingbing Suo, Zhenyi Wen|| || || |
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||[[atom]] ||Atom calculations ||Zhendong Li || ||[[tddft]] ||TD-DFT ||Zhendong Li, Bingbing Suo || ||mp2 ||MP2 ||Bingbing Suo || |
|
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||x2c ||useful ??? || || ||traintmc ||??? || || ||undmcscf ||- || || |
|| || |
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||localmo ||localization || ||properties ||??? || || ||reorderorb ||??? || || ||mccepa ||MC-CEPA || || ||grad ||Gradients || || ||detci ||DET-CI (Knowles) ||interfaced || ||socint ||??? || || ||contsi ||??? || || ||strmcrcfgs ||String-CI (Hoffmann) ||interfaced || ||strci ||??? || || ||norbord ||??? || || ||dpdmrpt2 ||DPD-MPRT2 || || ||libmath_test ||test for math libraries ||Zhendong Li || ||ccsdso ||CCSDSO ||Fan Wang || |
|| || ||[[ccsdso]] ||CCSDSO ||Fan Wang || |
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|| || ||libmath_test ||test for math libraries ||Zhendong Li || || || |
|
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|| || | |
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||[[vgmfci]] ||VGMFCI ||Bingbing Suo, Patrick || ||[[nmr]] ||NMR ||Minghong Yuan || ||expandmo ||??? || || ||[[resp]] ||DFT-response theory ||Zhendong Li || |
|| || ||[[vgmfci]] ||VGMFCI ||Bingbing Suo, Patrick Cassam-Chenaï|| || || ||mccepa ||MC-CEPA || || || || ||x2c ||useful Remove latter || || ||traintmc ||AO-MO Integral transformation for undmcscf ||Bingbing Suo || ||undmcscf ||MCSCF from undmol ||Bingbing Suo || ||rhfscf ||??? || || ||mrso ||Spin-orbital coupling based on GUGA, in developing ||Bingbing Suo || ||trnx ||??? || || ||guess ||Initial guess orbital ||Remove latter || ||properties ||??? || || ||reorderorb ||Reorder orbital for undmcscf ||Bingbing Suo || ||socint ||Spin-orbital coupling integral ?? || || ||contsi ||Constraint state interaction CI, in developing || || ||strmcrcfgs ||String-CI (Hoffmann) ||interfaced || ||strci ||String CI || || ||norbord ||Interface for undmcscf || || ||[[noxci]] ||non-orthogonal MRCID(with double excitation contracted ) ||Chao Huang || ||[[nrcc]] ||non-relativistic restricted CCD/CCSD/EOM-CCSD||Chao Huang || ||[[corr2]] ||(SR)MP2,Epstein-Nesbet PT2,IEPA, etc double excitation correlation (Energy& Coefficient) ||Chao Huang || |
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In general, there are two kinds of folder in bdf-pkg/source. One type of folders with suffix "_util" (such as scf_util) corresponds to folders that do not contain a main program. They contain library routines shared or used by different programs. The other type of folders (such as scf) corresponds to folders which contain a main.F90 program. Source codes in these folder are compiled and linked to an executable files with the name "foldername.x" and are saved in directory bdf-pkg/bin. Folders in '''bdf-pkg/source''': ||'''Folder''' ||'''Description''' || |
|
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||bdf_opencl_util || || | ||bdf_opencl_util ||System util of OpenCL support in BDF || |
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||cl_dft_kernel || || | ||cl_dft_kernel ||OpenCL kernels for DFT, C99 language || |
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||corr2 || || | |
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||dft || || | ||dft ||Share library of DFT, should be changed to dft_util || |
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||erd || || ||erd_ACESIII || || ||eri_util || || |
||erd ||Remove later || ||erd_ACESIII ||Remove later || ||eri_util ||Library for ERI and gradients calculation || |
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||expandmo || || | |
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||f77_xc || || | ||f77_xc ||XC functional Fortran 77 code || |
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||fmm_util || || ||genfrag || || |
||fmm_util ||Faster multipole library - in developing || |
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||grad || || ||grad_util || || ||group_util || || |
||grad_util ||Share library for gradients || ||group_util ||Share library for point group untility || |
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||include || || ||int1e_util || || ||int_util || || |
||include ||Fortran and C head files || ||int1e_util ||Library of 1e integrals || ||int_util ||Library of 2e integrals || |
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||noxci || || ||noxci_util || || |
|
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||para_util || || | ||para_util ||Library for parallel calculation. || |
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||resp || || | ||resp ||driver of response || |
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||scf || || ||scf_util || || |
||scf ||SCF program || ||scf_util ||Library of SCF || |
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||sys_util || || ||tddft || || |
||sys_util ||System libraries such as IO, system initialization || ||tddft ||TDDFT || |
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||tddft_util || || | ||tddft_util ||Share library of TDDFT || |
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||vgmfci || || ||x2c || || ||xuanyuan || || |
BDF-G: Gaussian function based BDF (Beijing Density Functional) program package
Chinese version: https://bdf-manual.readthedocs.io/en/latest/ (note that this is the manual of the commercialized version of BDF, which only includes a subset of all the functionalities of BDF)
Version history
The Gaussian function based BDF program started in 2009 based on several contributions from previous group members.
Compared with other quantum chemistry programs, it mainly focuses on relativistic effects and excited-state properties of large molecules.
Currently, it is not open to everyone, since we are still trying to make it easier to use.
However, if you are interested in using it for the above problems, please contact the authors for collaboration:
Wenjian Liu: https://www.researchgate.net/profile/Wenjian_Liu
Bingbing Suo: https://www.researchgate.net/profile/Bingbing_Suo
Zhendong Li: https://www.researchgate.net/profile/Zhendong_Li4
- .....
List of features
Current features
- Relativistic Hamiltonians: sf-X2C/SOMF
R,RO,U SCF (scf): Hatree-Fock and DFT. The fragmentation-based FLMO method can speedup the calculation of very large molecules while still obtaining the exact results; the converged localized MOs (LMOs) can be obtained as a byproduct for free.
Variants of TD-DFT (tddft), with special emphasis on open-shell TD-DFT, SOC effects at the TD-DFT level, and internal roots (e.g. core excitations) at the TD-DFT level
MP2 (mp2) for MP2, SCS-MP2 and double hybrid functional calculations, and Local MP2 based on fragmentations
BDFOPT (bdfopt): Geometry optimization, numerical Hessian and thermochemistry analysis
MCSCF (mcscf): Multi-configuration self-consistent-field
Localmo (localmo): Orbital localization by localization functionals.
Expandmo (expandmo): imposed CAS (iCAS) and AVAS for automatic active space selection and expand molecular orbital from a small basis set into a large basis set.
Gradient (grad and resp): SCF, DFT, TDDFT, (SA-)CASSCF analytic gradients
Response properties (resp): DFT and TDDFT non-adiabatic coupling matrix elements, polarizabilities, hyperpolarizabilities etc.
Numerical Gradient (numgrad): Numerical gradient for SCF, DFT, TDDFT, CCSD(T), MCSCF and Multi Reference methods in xianci module
MOs integrals transformation (traint): MOs integrals transformation for TDDFT, MRCI, MRPT2 and other Post-HF methods.
VGMF-CI (vgmfci): Vibrational General Mean Field Configuration interaction
NMR (nmr): Nuclear Magnetic Resonance
- MRCISD: from uncontracted to fully internally contracted MRCI,
- MRPT2: Various MRPT2 methods include MS-NEVPT2/3, SDSPT2, SDSCI, CB-MRPT2/3
CCSD,CCSD(T),EOM-CCSD (ccsdso): Coupled Cluster Theory developed in Sichuan University (Prof. Fan Wang).
- REM: Renormalize Exciton Method developed by Nanjing University. (Prof. Jing Ma. Prof. Haibo Ma)
NTO analysis (tddft): Natural transition orbital analysis based on TDDFT/TDHF
- Two diabatic states coupling to calculate energy transfer and charge transfer integrals.
Automatic fragmentation driver (autofrag) for fragmentation-based methods (FLMO, iOI)
Package developed by other groups that are interfaced or integrated into BDF
CC with SOC ccsdso (Fan Wang)
- UND-MCSCF -- Developed by Mark Hoffman in North Dakota University
- MCCEPA
- DETCI
Xi'an-CI Program xianci -- Developed by Zhenyi Wen, Yubin Wang, Zhengting Gan, Bingbing Suo and Yibo Lei in Northwest University
- GEBF -- Developed by Nanjing University
- dlfind
- libcint
- xcfun
- libxc
UniMoVib (Wenli Zou)
Under development
Future development
Large-scale DFT/TD-DFT and heterogeneous computing (Bingbing Suo)
2C and 4C DHF/KS (Daoling Peng)
NMR and NSR (Yunlong Xiao)
QM/MM (Jun Gao)
- Interface to dynamics (Jun Gao)
Recent major changes
2019.11.28: By Bingbing Suo: BDF easy input
An important progress for users. BDF now supports a simplified input style. see bdfeasyinput
Known problems
Quick start
To get a quick start, please refer to the examples in bdf-pkg/tests/input/.
- Characters in BDF input are case insensitive. However, the name of basis set file should be capital letters such as "CC-PVDZ". The environment variables such as BDFHOME, BDF_TMPDIR, BDF_WORKDIR should be capital letters.
Programs
The following programs are listed in bdf-pkg/database/program.dat. If there is any problem or question, please contact the corresponding authors.
Brief introduction |
Main authors |
|
几何结构与基组 |
Bingbing Suo |
|
|
||
积分计算 |
Bingbing Suo |
|
|
||
SCF (KS and HF) |
Bingbing Suo, Zhendong Li |
|
|
||
积分变换 |
Bingbing Suo |
|
|
||
TD-DFT |
Zhendong Li, Bingbing Suo |
|
|
||
DFT-response theory |
Zhendong Li |
|
|
||
mp2 |
MP2 |
Bingbing Suo |
|
||
localization |
|
|
|
||
Geometry optimization |
Bingbing Suo, Zhendong Li |
|
|
||
NMR |
Minghong Yuan |
|
|
||
MCSCF |
Bingbing Suo, Yibo Lei |
|
|
||
Analytic Gradients - RHF and MCSCF |
Bingbing Suo, Yibo Lei |
|
Numerical Gradients - RHF, MCSCF, Xi'an-CI methods |
Yibo Lei |
|
|
||
AVAS method and expand MO coefficients from a small basis set to a large basis set |
Bingbing Suo, Yibo Lei |
|
|
||
Atom calculations |
Zhendong Li |
|
|
||
drt |
DRT |
Yibo Lei, Yubin Wang, Bingbing Suo, Zhenyi Wen |
mrci |
MRCI |
Yibo Lei, Yubin Wang, Bingbing Suo, Zhenyi Wen |
MRCI from uncontracted to fully internally contracted MRCI, Various MRPT2 methods |
Yibo Lei, Yubin Wang, Bingbing Suo, Zhenyi Wen |
|
|
||
dhf |
Dirac-HF |
Zhendong Li |
relscf |
REL-SCF |
Bingbing Suo |
|
||
fci |
FCI without symmetry |
Zhendong Li |
|
||
CCSDSO |
Fan Wang |
|
eomipso |
EOM-IP-SO |
Fan Wang |
eomeaso |
EOM-EA-SO |
Fan Wang |
eomeeso |
EOM-EE-SO |
Fan Wang |
|
||
libmath_test |
test for math libraries |
Zhendong Li |
|
||
genfrag |
Fragments |
Bingbing Suo |
|
||
mcmp2 |
Monte-Carlo MP2 (unfinished) |
Zhendong Li |
|
||
VGMFCI |
Bingbing Suo, Patrick Cassam-Chenaï |
|
|
||
mccepa |
MC-CEPA |
|
|
||
x2c |
useful Remove latter |
|
traintmc |
AO-MO Integral transformation for undmcscf |
Bingbing Suo |
undmcscf |
MCSCF from undmol |
Bingbing Suo |
rhfscf |
??? |
|
mrso |
Spin-orbital coupling based on GUGA, in developing |
Bingbing Suo |
trnx |
??? |
|
guess |
Initial guess orbital |
Remove latter |
properties |
??? |
|
reorderorb |
Reorder orbital for undmcscf |
Bingbing Suo |
socint |
Spin-orbital coupling integral ?? |
|
contsi |
Constraint state interaction CI, in developing |
|
strmcrcfgs |
String-CI (Hoffmann) |
interfaced |
strci |
String CI |
|
norbord |
Interface for undmcscf |
|
non-orthogonal MRCID(with double excitation contracted ) |
Chao Huang |
|
non-relativistic restricted CCD/CCSD/EOM-CCSD |
Chao Huang |
|
(SR)MP2,Epstein-Nesbet PT2,IEPA, etc double excitation correlation (Energy& Coefficient) |
Chao Huang |
Source
In general, there are two kinds of folder in bdf-pkg/source. One type of folders with suffix "_util" (such as scf_util) corresponds to folders that do not contain a main program. They contain library routines shared or used by different programs. The other type of folders (such as scf) corresponds to folders which contain a main.F90 program. Source codes in these folder are compiled and linked to an executable files with the name "foldername.x" and are saved in directory bdf-pkg/bin.
Folders in bdf-pkg/source:
Folder |
Description |
atom |
|
atom_mod |
|
atom_util |
|
bdf_cvwint2e |
|
bdf_opencl_util |
System util of OpenCL support in BDF |
bdf_rel1e |
|
bdf_rel1e_NRpart |
|
bdf_rel2e |
|
bdf_relbas |
|
bdf_relmod |
|
bdf_relshl |
|
bdf_x2c |
|
c_util |
|
cbmrpt2 |
|
ccsdso |
|
ccsdso_util |
|
cdri_util |
|
ci_util |
|
cl_dft_kernel |
OpenCL kernels for DFT, C99 language |
class |
|
compass |
|
contsi |
|
corr2 |
|
detci |
|
dft |
Share library of DFT, should be changed to dft_util |
dhf |
|
dpdmrpt2 |
|
drt |
|
ecpint_util |
|
eomeaso |
|
eomeaso_util |
|
eomeeso |
|
eomeeso_util |
|
eomipso |
|
eomipso_util |
|
erd |
Remove later |
erd_ACESIII |
Remove later |
eri_util |
Library for ERI and gradients calculation |
exact2c_util |
|
extra_lib |
|
f77_cg |
|
f77_dftd3 |
|
f77_util |
|
f77_xc |
XC functional Fortran 77 code |
fci |
|
flmo_util |
|
fmm_util |
Faster multipole library - in developing |
geom_opt |
|
grad_util |
Share library for gradients |
group_util |
Share library for point group untility |
icci_new_918 |
|
icoord_mod |
|
include |
Fortran and C head files |
int1e_util |
Library of 1e integrals |
int_util |
Library of 2e integrals |
lagrangian |
|
libecctrip |
|
libmath_f77 |
|
libmath_mod |
|
libmath_test |
|
libmath_util |
|
libmathc_util |
|
libr |
|
librcc |
|
libundmol |
|
list |
|
localmo |
|
mathlib |
|
mccepa |
|
mccepa_util |
|
mcci |
|
mcgugaci_util |
|
mcmodule |
|
mcmp2 |
|
mcrcfgs |
|
mcscf |
|
mcscf_util |
|
mctpdmcfg |
|
mctrans |
|
module |
|
mp2 |
|
mrci |
|
mrso |
|
nmr |
|
nmr_mod |
|
norbord |
|
noxci |
|
noxci_util |
|
opdmcfg |
|
orbhess |
|
orbord |
|
orbxcsfcfg |
|
para_util |
Library for parallel calculation. |
pmrci |
|
postscf |
|
properties |
|
relint1e_util |
|
relint2e_util |
|
relscf |
|
reorderorb |
|
resp |
driver of response |
resp_f77 |
|
resp_mod |
|
resp_util |
|
respc_util |
|
scf |
SCF program |
scf_util |
Library of SCF |
socint |
|
soint_util |
|
strci |
|
strmcrcfgs |
|
sys_util |
System libraries such as IO, system initialization |
tddft |
TDDFT |
tddft_props |
|
tddft_util |
Share library of TDDFT |
tddftc |
|
tidyorb |
|
tools |
|
tpdmcfg |
|
traint |
|
traint_util |
|
traintmc |
|
undmcscf |
|
undmol_drv |
|
undmol_util |
|