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Size: 4801
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← Revision 139 as of 2024-04-29 08:00:00 ⇥
Size: 6092
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| Deletions are marked like this. | Additions are marked like this. |
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| ||Node08 ||3950X-RadeonVII ||NWU ||Bsuo ||Centos 7.7 ||Ryzen9-3950X 3.5G/128G ||16 ||MKL || ||Node09 ||3970X-2080Ti ||NWU ||Bsuo ||Centos 7.7 ||Ryzen TR-3970X 3.7G/128G ||32 ||MKL || ||Node10 ||YuleChem ||NWU ||Bsuo ||Centos 7.7 ||Ryzen7-5800X 3.6G/32G ||8 ||MKL || ||Node11 ||mw01 ||NWU ||Leird||Centos 7.7 ||i9-10900K 3.7G/32G ||10 ||MKL || |
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| == SCF energy and gradient : ERI and Schwartz prescreeening == | == SCF energy and gradient : ERI and Schwartz prescreening == |
| Line 32: | Line 36: |
| ||Node01 ||8 ||213.1 ||45.0 ||NA ||NA ||ifort 17.0.5, -O2 ||gcc 4.8.5, -O2 ||2d56ebf41bbbd73 2019/09/19|| | ||Node01 ||8 ||213.1 ||45.0 ||NA ||NA ||ifort 17.0.5, -O2 ||gcc 4.8.5, -O2 ||2d56ebf41bbbd73 2019/09/20 || |
| Line 34: | Line 38: |
| ||Node01 ||4 ||336.5 ||65.8 ||NA ||NA ||ifort 17.0.5, -O2 ||gcc 4.8.5, -O2 ||8ff772715c86625 2019/09/19 || | ||Node01 ||4 ||336.5 ||65.8 ||NA ||NA ||ifort 17.0.5, -O2 ||gcc 4.8.5, -O2 ||2d56ebf41bbbd73 2019/09/20 || |
| Line 41: | Line 45: |
| ||Node05 ||4 ||443.7 ||87.2 ||NA ||NA ||ifort 17.0.5, -O2 ||gcc 7.4.0, -O2 ||46e74f7cde63aa39 2019/09/20 || | ||Node05 ||4 ||443.7 ||87.2 ||NA ||NA ||ifort 17.0.5, -O2 ||gcc 7.4.0, -O2 ||2d56ebf41bbbd73 2019/09/20 || |
| Line 43: | Line 47: |
| ||Node06 ||8 ||238.9 || 65.7 ||NA ||NA ||gfortran 7.4.0, -O2 ||gcc 7.4.0, -O2 ||8ff772715c86625c 2019/09/19 || | ||Node06 ||8 ||238.9 ||65.7 ||NA ||NA ||gfortran 7.4.0, -O2 ||gcc 7.4.0, -O2 ||8ff772715c86625c 2019/09/19 || ||Node08 ||8 ||190.2 ||35.3 ||NA ||NA ||ifort 17.0.5, -O2 ||gcc 4.8.0, -O2 ||2d56ebf41bbbd73 2019/09/20 || ||Node08 ||16 ||106.2 ||19.5 ||NA ||NA ||ifort 17.0.5, -O2 ||gcc 4.8.0, -O2 ||2d56ebf41bbbd73 2019/09/20 || ||Node09 ||8 ||188.3 ||35.3 ||NA ||NA ||ifort 17.0.5, -O2 ||gcc 4.8.0, -O2 ||2d56ebf41bbbd73 2019/09/20 || ||Node09 ||32 ||53.5 ||9.6 ||NA ||NA ||ifort 17.0.5, -O2 ||gcc 4.8.0, -O2 ||2d56ebf41bbbd73 2019/09/20 || ||Node10 ||8 ||132.1 ||39.8 ||NA ||NA ||ifort 17.0.5, -O2 ||gcc 8.5.0, -O2 ||1b9ac67257bac087 2022/01/05 || ||Node10 ||8 ||132.9 ||40.2 ||NA ||NA ||ifort 17.0.5, -O2 ||gcc 8.5.0, -O2 ||2d56ebf41bbbd73 2022/01/05 || || Node11 || 4 || 331.7 || 87.3 || NA || NA || ifort 19.0.4, -O2 || icc 19.0.4, -O2 || 9b9a2996570b20e 2019/09/15 || || Node11 || 8 || 179.6 || 49.4 || NA || NA || ifort 19.0.4, -O2 || icc 19.0.4, -O2 || 9b9a2996570b20e 2019/09/15 || |
| Line 45: | Line 57: |
| Test results of bacteriochlorophyll and its oligomers: DFT calcualtion. GB3lyp. | Notice: version Hash number is incomplete. Test results of bacteriochlorophyll and its oligomers: DFT calculation. GB3lyp. |
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| ||<style="text-align:center" |2>Platform ||<style="text-align:center" |2>NCores ||||<style="text-align:center">monomer ||||<style="text-align:center">dimer||||<style="text-align:center">trimer||<style="text-align:center" |2>Fortran ||<style="text-align:center" |2>C ||<style="text-align:center" |2>BDF Version || | ||<style="text-align:center" |2>Platform ||<style="text-align:center" |2>NCores ||||<style="text-align:center">monomer ||||<style="text-align:center">dimer ||||<style="text-align:center">trimer ||<style="text-align:center" |2>Fortran ||<style="text-align:center" |2>C ||<style="text-align:center" |2>BDF Version || |
| Line 50: | Line 65: |
| ||Node07 ||20 ||735.8 ||193.6 ||4385.0 ||968.7 ||12282.8 ||2264.6 ||ifort 15.0.0, -O2 ||icpc 15.0.0, -O2 ||f53d2661688d444 2019/09/15 || ||Node01 ||8 ||974.5 ||222.3|| NA || NA || NA || NA || ifort 17.0.5, -O2 || icpc 17.0.5, -O2 ||fe2a8ebbb59dcb67 2019/09/17 || ||Node01 ||8 ||974.5 ||194.3|| NA || NA || NA || NA || ifort 17.0.5, -O2 || icpc 17.0.5, -O2 ||2d56ebf41bbbd737 2019/09/19 || |
||Node07 ||20 ||741.0 ||151.4 ||4380.3 ||872.6 ||12214.0 ||1640.6 ||ifort 15.0.0, -O2 ||icpc 15.0.0, -O2 ||f53d2661688d444 2019/09/15 || ||Node01 ||8 ||974.5 ||222.3 ||NA ||NA ||NA ||NA ||ifort 17.0.5, -O2 ||icpc 17.0.5, -O2 ||fe2a8ebbb59dcb67 2019/09/17 || ||Node01 ||8 ||974.5 ||194.3 ||5691.1 ||915.2 ||13997.6 ||2190.7 ||ifort 17.0.5, -O2 ||icpc 17.0.5, -O2 ||2d56ebf41bbbd737 2019/09/20 || |
| Line 61: | Line 79: |
| ||Node05 ||4 ||443.2 ||87.2 ||NA ||NA ||NA ||NA || BDF/OpenMP || | ||Node05 ||4 ||443.2 ||87.2 ||NA ||NA ||NA ||NA ||BDF/OpenMP || |
BDF Benchmark
Contents
These data are used to assess BDF and also benchmark CPU and compilers.
Molecules and basis sets used in benchmarks
Molecule |
Level of theory |
Natoms |
NBFs |
DNA-1 |
HF/cc-pVDZ |
62 |
625 |
Bacteriochlorophyll a |
GB3LYP/def2-SV(P) |
140 |
1076 |
Bacteriochlorophyll a dimer |
GB3LYP/def2-SV(P) |
280 |
2152 |
Bacteriochlorophyll a trimer |
GB3LYP/def2-SV(P) |
420 |
3228 |
Benchmark platforms
No. |
Hostname |
Location |
Name |
OS |
CPU/MEM |
NCOREs |
Mathlib |
Node01 |
AMD-Radoen VII |
NWU |
BSuo |
Cent OS 7.6 |
i9-9900K 3.6G/64G |
8 |
MKL |
Node02 |
Bsuo-Mac |
NWU |
BSuo |
MacOS 10.14.4 |
i7-8559U 2.7G/16G |
4 |
Netlib |
Node03 |
gpu-amd |
NWU |
Bsuo |
CenOS 6.6 |
i7-4790K 3.6G/32G |
4 |
MKL |
Node04 |
gpu02 |
NWU |
Bsuo |
CentOS 7.6 |
E5-2680v4 2.4GH/128G |
28 |
MKL |
Node05 |
Bsuo-NCU |
NWU |
Bsuo |
Ubuntu 18.04.2 |
i7-8809G 3.1GH/32G |
4 |
MKL |
Node06 |
Ryzen7 |
COSCAR/CNIC |
YJMa |
Ubuntu 18.04.3 |
Ryzen7-3700X 3.6G/64G |
8 |
MKL |
Node07 |
Actinium2 |
PKU |
wzk |
Debian 3.2.60 |
E5-2660v3 2.6G/256G |
20 |
MKL |
Node08 |
3950X-RadeonVII |
NWU |
Bsuo |
Centos 7.7 |
Ryzen9-3950X 3.5G/128G |
16 |
MKL |
Node09 |
3970X-2080Ti |
NWU |
Bsuo |
Centos 7.7 |
Ryzen TR-3970X 3.7G/128G |
32 |
MKL |
Node10 |
NWU |
Bsuo |
Centos 7.7 |
Ryzen7-5800X 3.6G/32G |
8 |
MKL |
|
Node11 |
mw01 |
NWU |
Leird |
Centos 7.7 |
i9-10900K 3.7G/32G |
10 |
MKL |
SCF energy and gradient : ERI and Schwartz prescreening
All times in the following tables are the wall time in seconds.
Platform |
NCores |
DNA-1 . |
Taxol |
Fortran |
C |
BDF Version |
||
SCF Ene. |
SCF Grad. |
SCF Ene. |
SCF Grad. |
|||||
Node01 |
8 |
212.9 |
59.3 |
NA |
NA |
ifort 17.0.5, -O2 |
gcc 4.8.5, -O2 |
985098074af19ec 2019/09/14 |
Node01 |
8 |
213.1 |
45.0 |
NA |
NA |
ifort 17.0.5, -O2 |
gcc 4.8.5, -O2 |
2d56ebf41bbbd73 2019/09/20 |
Node01 |
4 |
333.9 |
87.9 |
NA |
NA |
ifort 17.0.5, -O2 |
gcc 4.8.5, -O2 |
985098074af19ec 2019/09/14 |
Node01 |
4 |
336.5 |
65.8 |
NA |
NA |
ifort 17.0.5, -O2 |
gcc 4.8.5, -O2 |
2d56ebf41bbbd73 2019/09/20 |
Node02 |
4 |
977.7 |
276.8 |
NA |
NA |
gfortran 7.4.0, -Ofast |
gcc 7.4.0, -Ofast |
985098074af19ec 2019/09/14 |
Node03 |
4 |
539.2 |
144.7 |
NA |
NA |
ifort 13.0.1, -O2 |
gcc 6.1.0, -O2 |
9b9a2996570b20e 2019/09/15 |
Node04 |
8 |
321.3 |
91.2 |
NA |
NA |
ifort 15.0.1, -O2 |
gcc 4.8.5, -O2 |
9b9a2996570b20e 2019/09/15 |
Node04 |
4 |
568.2 |
167.1 |
NA |
NA |
ifort 15.0.1, -O2 |
gcc 4.8.5, -O2 |
9b9a2996570b20e 2019/09/15 |
Node04 |
28 |
99.6 |
27.9 |
NA |
NA |
ifort 15.0.1, -O2 |
gcc 4.8.5, -O2 |
9b9a2996570b20e 2019/09/15 |
Node05 |
4 |
438.1 |
115.1 |
NA |
NA |
ifort 17.0.5, -O2 |
gcc 7.4.0, -O2 |
9b9a2996570b20e 2019/09/15 |
Node05 |
4 |
443.7 |
87.2 |
NA |
NA |
ifort 17.0.5, -O2 |
gcc 7.4.0, -O2 |
2d56ebf41bbbd73 2019/09/20 |
Node06 |
4 |
437.7 |
120.6 |
NA |
NA |
gfortran 7.4.0, -O2 |
gcc 7.4.0, -O2 |
9b9a2996570b20e 2019/09/15 |
Node06 |
8 |
238.9 |
65.7 |
NA |
NA |
gfortran 7.4.0, -O2 |
gcc 7.4.0, -O2 |
8ff772715c86625c 2019/09/19 |
Node08 |
8 |
190.2 |
35.3 |
NA |
NA |
ifort 17.0.5, -O2 |
gcc 4.8.0, -O2 |
2d56ebf41bbbd73 2019/09/20 |
Node08 |
16 |
106.2 |
19.5 |
NA |
NA |
ifort 17.0.5, -O2 |
gcc 4.8.0, -O2 |
2d56ebf41bbbd73 2019/09/20 |
Node09 |
8 |
188.3 |
35.3 |
NA |
NA |
ifort 17.0.5, -O2 |
gcc 4.8.0, -O2 |
2d56ebf41bbbd73 2019/09/20 |
Node09 |
32 |
53.5 |
9.6 |
NA |
NA |
ifort 17.0.5, -O2 |
gcc 4.8.0, -O2 |
2d56ebf41bbbd73 2019/09/20 |
Node10 |
8 |
132.1 |
39.8 |
NA |
NA |
ifort 17.0.5, -O2 |
gcc 8.5.0, -O2 |
1b9ac67257bac087 2022/01/05 |
Node10 |
8 |
132.9 |
40.2 |
NA |
NA |
ifort 17.0.5, -O2 |
gcc 8.5.0, -O2 |
2d56ebf41bbbd73 2022/01/05 |
Node11 |
4 |
331.7 |
87.3 |
NA |
NA |
ifort 19.0.4, -O2 |
icc 19.0.4, -O2 |
9b9a2996570b20e 2019/09/15 |
Node11 |
8 |
179.6 |
49.4 |
NA |
NA |
ifort 19.0.4, -O2 |
icc 19.0.4, -O2 |
9b9a2996570b20e 2019/09/15 |
Notice: version Hash number is incomplete.
Test results of bacteriochlorophyll and its oligomers: DFT calculation. GB3lyp.
Bcl-1: SCF Niter=20, ESCF=-3008.7079347095
Platform |
NCores |
monomer |
dimer |
trimer |
Fortran |
C |
BDF Version |
|||
SCF Ene. |
SCF Grad. |
SCF Ene. |
SCF Grad. |
SCF Ene. |
SCF Grad. |
|||||
Node07 |
20 |
741.0 |
151.4 |
4380.3 |
872.6 |
12214.0 |
1640.6 |
ifort 15.0.0, -O2 |
icpc 15.0.0, -O2 |
f53d2661688d444 2019/09/15 |
Node01 |
8 |
974.5 |
222.3 |
NA |
NA |
NA |
NA |
ifort 17.0.5, -O2 |
icpc 17.0.5, -O2 |
fe2a8ebbb59dcb67 2019/09/17 |
Node01 |
8 |
974.5 |
194.3 |
5691.1 |
915.2 |
13997.6 |
2190.7 |
ifort 17.0.5, -O2 |
icpc 17.0.5, -O2 |
2d56ebf41bbbd737 2019/09/20 |
Computational time from the third party programs.
Platform |
NCores |
DNA-1 . |
Taxol |
Fortran |
C |
Program |
||
SCF Ene. |
SCF Grad. |
SCF Ene. |
SCF Grad. |
|||||
Node01 |
8 |
315.1 |
91.1/49.7 |
NA |
NA |
NA |
NA |
Package1/MPI |
Node01 |
4 |
333.4 |
93.4/90.1 |
NA |
NA |
NA |
NA |
Package1/MPI |
Node05 |
4 |
453.1 |
122.6/118.9 |
NA |
NA |
NA |
NA |
Package1/MPI |
Node05 |
4 |
242.7 |
65.4 |
NA |
NA |
NA |
NA |
Package2/SHMM |
Node05 |
4 |
443.2 |
87.2 |
NA |
NA |
NA |
NA |
BDF/OpenMP |